The movie is set on a state-of-the art Aegis vessel with the full cooperation of Japan's real-life Ministry of Defense and Maritime Self-Defense Force. The corpse of a Self-Defense Force member has been found — minus the left arm — and a spy has infiltrated the Aegis vessel. The heroine Ran is put in jeopardy, and Conan is forced to stand up against the dangerous Spy "X."

The son of a world famous mystery writer, Jimmy Kudo, has achieved his own notoriety by assisting the local police as a student detective. He has always been able to solve the most difficult of criminal cases using his wits and power of reason.

Private investigator Mort Madison's life begins spiraling downward when a beguiling, slightly familiar woman hires him for his most unusual case.

Mouri Kogoro is called to a special case in the ancient capital of Kyoto. There, Conan meets Heiji and they team up once again to solve the case, recover the stolen Healing Buddha statue, and even discover the identity of Heiji's first love.

A terrorist group invades a laboratory containing a deadly bacteria and destroys the lab with an explosion. They later announce via the internet they have gained possession of the bacteria and declare themselves to be the Red Siamese Cats, a terrorist group that was eradicated a decade ago.

On a dark night, the Japanese police is raided by a spy. Different countries' intelligence agencies - such as England's MI6, Germany's BDN, and America's CIA - as well as the FBI's secret files are going to be taken, but public safety officers lead by Tooru Amuro arrive just in time. The spy steals a car and escapes. The spy and Amuro are then locked in a dead heat on the highway, and just as it is about to cause an accident with multiple cars, the spy's car is hit by FBI agent Shuichi Akai's rifle bullet and falls of the roadway. The next day, Conan and his friends go to a newly-remodeled aquarium in Tokyo. Under the main attraction, a Ferris wheel, Conan finds an attractive woman alone and injured. Her left and right eyes are different colors.

At the opening ceremony of the WSG (World Sports Games) Tokyo Games, a sports festival held once every four years, it is announced that the world's first vacuum superconducting maglev with a maximum speed of 1,000 kilometers per hour will open. While attracting attention from around the world, top executives of large companies are kidnapped from the party venue where WSG tournament sponsors gather. Conan moves toward a solution and eventually finds a connection with the WSG abduction case that occurred 15 years ago in Boston, USA.

Yoonchul is a sculptor, but he mostly makes living with an interior design job. He is divorced, and his daughter fails to fit into the school life and is considered a troublemaker, although she shows much talent in art, like her father. One day, Yoonchul meets an attractive woman, Youngji, and falls in love with her.

The Isle of Koumi, a beautiful island in the Pacific Ocean. On the island, people pass an old legend down from generation to generation that there was the Seabed Palace, an ancient ruin at the bottom of the sea, where the treasure of female pirates Anne Bonny and Mary Reed was left. When Conan and his friends visit Koumi while on vacation, they meet some suspicious treasure hunters.

Mike Hama, Private Detective, is a chain-smoking, wisecracking tough guy with a weakness for the ladies and a soft spot in his heart, especially for his kid sister Akane. Mike's so down on his luck he'll take any case, from finding a lost pet to spying on cheating spouses. But every now and then, along comes a client with dubious and dangerous case… and that's when Mike shows his stuff.